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Combinatorial geometry of rational quasi-independence models as toric fiber products

Jane Ivy Coons, Heather A. Harrington and Niharika Chakrabarty Paul

Vol. 17 (2026), No. 1, 1–31
Abstract

We investigate the geometry of a family of log-linear statistical models called quasi-independence models. The toric fiber product (TFP) is useful for understanding the geometry of parameter inference in these models because the maximum likelihood degree is multiplicative under the TFP. We define the coordinate toric fiber product, or cTFP, and give necessary and sufficient conditions under which a quasi-independence model is a cTFP of lower-order models. We show that the vanishing ideal of every 2-way quasi-independence model with ML-degree 1 can be realized as an iterated toric fiber product of linear ideals. This implies that all such models have a parametrization under which the iterative proportional scaling procedure computes the exact symbolic maximum likelihood estimate in one iteration. We also classify which Lawrence lifts of 2-way quasi-independence models are cTFPs and give a necessary condition under which a k-way model has ML-degree 1 using its facial submodels.

Keywords
quasi-independence model, algebraic statistics, toric fiber product, iterative proportional scaling, discrete geometry, toric geometry, bipartite graphs
Mathematical Subject Classification
Primary: 05C90, 14M25, 62F30, 62R01
Milestones
Received: 11 April 2025
Revised: 15 August 2025
Accepted: 22 September 2025
Published: 29 December 2025
Authors
Jane Ivy Coons
Department of Mathematical Sciences
Worcester Polytechnic Institute
Stratton Hall
Worcester, MA
United States
Heather A. Harrington
Max Planck Institute of Molecular Cell Biology and Genetics
Dresden
Germany
Center for Systems Biology Dresden
Dresden
Germany
Technical University of Dresden
Dresden
Germany
Mathematical Institute
University of Oxford
Niharika Chakrabarty Paul
Max Planck Institute for Mathematics in the Sciences
Leipzig
Germany